I would bet that the dry flow of a big-log head is quite even under normal RPMs. While the fore and aft cylinders are further away from the central intake hole, they benefit from tuning effect in compensation.
As for aiming the injector at the valve itself, this is primarily an emissions consideration, employed to ensure that the max possible amount of fuel enters the cylinder instead of evaporating into the atmosphere. Conversely, most racing engines position the injector
as far as possible from the valve to give the fuel maximum time to evaporate. The act of evaporating has two functions: the first is to cool the charge and hence increase its density and therefore maximize the engine's volumetric efficiency. The second is to minimize the number and size of fuel droplets that enter the cylinder. Liquid fuel can't combust, and since racing engines are by definition trying to make the most power, their designers want to ensure that the fuel is as fully evaporized as is practical
prior to the fuel passing the intake valve.
Therefore, for a turd-head engine, placing the injectors above the centerline of the intake runner on the outside of the log would probably be the most effective position from a high revving, max performance standpoint. That having been said, there is nothing intrinsically wrong with positioning the injectors on the bottom of the runner. By squirting the fuel against the opposite wall of the runner (the top wall in this case), the fuel has more opportunity to evaporate prior to entering the cylinder (always a good thing) and yet mixture imbalances are minimized by injecting closer to the valve than if the injectors were on the outside of the log. Of course, with the injectors on the bottom, one would still have the heat transfer issue to deal with.
FWIW, the latest generation of Formula Atlantics, the Swift 014a, positions the injectors on the bottom of the runners. In their case it's for packaging considerations, but there was no performance penalty compared to the traditional position on top. These engines pump out about 240 hp from 97 CID (1600cc) at 10,000 RPM, too, so don't get the impression that they're some weenie smog-motor...
