Without specifying what are the "low" values, it's difficult to say whether there is any kind of issue. Headers on a stock motor do very little (my experience has been they can quieten the motor (yes, really), and maybe improve fuel economy.
Perceived "lack of power" can come from an inadequate fuel supply curve, incorrect ignition base timing or faulty/inappropriate advance curve, misadjusted throttle linkage (surprisingly common), overheating, low compression (especially after a gasket change or head swap), retarded cam timing due to a stretched chain or emissions spec - the list goes on.
Start with the ignition; check the plug gaps and base timing. Then check the advance against factory specs as RPMs increase. When you've eliminated the ignition as a loss of power, move to compression, then induction/carburetion.
Regards, Adam.