I stuffed a 250 into my '66, which if I'm not mistaken is nearly identical to '69 as far as the engine compartment goes. From core support to cowl, my '66 Comet and '69 Ranchero were the same. I no longer have the '69 so i can't be 100% positive.
Now that I have the '66 Ranchero, it's exact match to my '66 Comets. I've been using the Fairlane for aftermarket parts for my Comet, so I see no reason why '69 frame brackets wouldn't work. The cool thing is that the T-5 was a near bolt-in using the original speedometer cable, z-bar, trans mount isolator and crossmember from C6 big block. Since you have a 3.03, you can use your throwout bearing and clutch fork. The clutch fork needs an adaptor. You'll need a zero balance flywheel for the 250. I had to modify the 200 motormounts to accommodate the 250, so I'm still in the market for framebrackets; however, it fits perfectly in the engine bay. And for some reason the 250 motormount isolators are hard to come by. I have an old set and they donot match the 200.
Good luck,